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You are here: Home / Structural Biology Coursework Modules / [3DEM] Three-dimensional Electron Microscopy / 3DEM Online Lectures

3DEM Online Lectures

Date Course Topic Author Lecture Title Downloads
2003/09 EMBO 2003 Helen Saibil Introduction embolec0-2003.7z (6.02 MB)
2003/09 EMBO 2003 Fourier Analysis Helen Saibil Introduction to Fourier Analysis embolec1-2003.7z (1.86 MB)
2003/09 EMBO 2003 Contrast Transfer Function (CTF) Correction, Convolution RA Crowther Convolution and Correlation embolec2-2003.7z (6.85 MB)
2003/09 EMBO 2003 TEM Image formation Elena Orlova Principles of TEM Image Formation embolec3-2003.7z (9.82 MB)
2003/09 EMBO 2003 Image Analysis, Noise and Alignment Helen Saibil Image acquisition and noise reduction embolec4-2003.7z (9.82 MB)
2003/09 EMBO 2003 Contrast Transfer Function (CTF) Correction, Convolution Helen Saibil Contrast Transfer Function (CTF) Correction embolec5-2003.7z (7.35 MB)
2003/09 EMBO 2003 Angular Reconstruction and Conical Tilt Nicolas Boisset Conical Tilt Reconstruction embolec6-2003.7z (13.1 MB)
2003/09 EMBO 2003 Image Analysis, Noise and Alignment Helen Saibil Alignment and Projection matching embolec7-2003.7z (2.19 MB)
2003/09 EMBO 2003 Multivariate Statistical Analysis Elena Orlova Multivariate Statistical Analysis and Classification embolec8-2003.7z (21 MB)
2003/09 EMBO 2003 Symmetry David de Rosier Symmetry – Common Lines in Reciprocal Space embolec9-2003.7z (2.96 MB)
2003/09 EMBO 2003 Angular Reconstruction and Conical Tilt Elena Orlova Angular Reconstruction embolec10-2003.7z (10 MB)
2003/09 EMBO 2003 3D Reconstruction Elena Orlova Methods of 3D reconstruction embolec11-2003.7z (4.26 MB)
2003/09 EMBO 2003 David de Rosier Combining EM with the results of X-Ray crystallography embolec12-2003.7z (37.7 MB)
2003 EMBO 2003 SPIDER Introduction to SPIDER/WEB and XIMDISP prac1.7z (7.36 MB)
2003 EMBO 2003 SPIDER Alignment and averaging (SPIDER) prac2.7z (110 MB)
2003 EMBO 2003 Contrast Transfer Function (CTF) Correction, Convolution Defocus and CTF correction prac3.7z (100 MB)
2003 EMBO 2003 Multivariate Statistical Analysis Alignment, MSA, Classification prac4.7z (19.6 MB)
2003 EMBO 2003 3D Reconstruction Angular reconstitution & 3D reconstruction prac5.7z (1.34 MB)
2003 EMBO 2003 O Manual fitting in O prac6.7z (2.59 MB)
2003/11/01 NRAMM 2003 2D Crystallisation Andrew Ward and Liz Kubalek Lipid layer crystallisation Lipid_lecture_2.pdf (10.6 MB)
2003/11/01 NRAMM 2003 2D Crystallisation Andrew Ward and Liz Kubalek Crystallisation of membrane proteins xtallogenesis.pdf (3.45 MB)
2003/11/01 NRAMM 2003 Automation Bridget Carragher Automated processing and reconstruction automation.pdf (11 MB)
2003/11/01 NRAMM 2003 Tomography Daniela Nicastro General Principles of EM Tomography tomography.pdf (12.7 MB)
2003/11/01 NRAMM 2003 Helical Processing David de Rosier A Tutorial on Helical Structures helical_analysis.pdf (5 MB)
2003/11/01 NRAMM 2003 Subject-based Lectures David de Rosier The Structure of the Chemotaxis Machinery chemotaxis.pdf (9.30 MB)
2003/11/01 NRAMM 2003 Subject-based Lectures Eva Nogales Structural Basis of MicrotMicrotubule Dynamic Instability microtubule.pdf (6.25 MB)
2003/11/01 NRAMM 2003 Normal Mode Flexible Fitting Florence Tama Normal Mode Flexible Fitting nmff.pdf (3.39 MB)
2003/11/01 NRAMM 2003 Cryo EM Joachim Frank Dynamics of the Ribosome as inferred by CryoEM ribosome.pdf (6.62 MB)
2003/11/01 NRAMM 2003 Single Particle Reconstruction Joachim Frank Single Particle Reconstruction – Part 1 single_particle.pdf (6.25 MB)
fei-03.pdf (1.53 MB)
2003/11/01 NRAMM 2003 Cryo EM John Briggs Cryo-electron microscopy of HIV: Searching for order in a complex system CryoEM-of-HIV.pdf
2003/11/01 NRAMM 2003 Fourier Analysis Michael Moody Basic Principles of Fourier Theory FourierTheory.pdf (1 MB)
2003/11/01 NRAMM 2003 Image Analysis, Noise and Alignment Michael Moody Fundamentals of Image Analysis and Averaging image_analysis.pdf (1.27 MB)
2003/11/01 NRAMM 2003 3D Reconstruction Robert M. Glaeser 3D Reconstruction of icosahedral particles 3d_icosahedral.pdf (16 MB)
2003/11/01 NRAMM 2003 Microscopy Theory Robert M. Glaeser Fundamentals of Microscopy Theory microscopy.pdf (2.49 MB)
2003/11/01 NRAMM 2003 Single Particle Reconstruction Stephen Ludtke Single Particle Reconstruction – Part 2 single_particle_part-2.pdf (2.34 MB)
2003/11/01 NRAMM 2003 2D Crystallisation Vinzens Unger Electron Crystallography of 2D crystals 2d_analysis.pdf (4.96 MB)
2003/11/01 NRAMM 2003 Cryo EM Wah Chiu The Future of Cryoelectron microscopy cryoem.pdf (2.2 MB)
2004/11 EMBO 2004 Fourier Analysis David de Rosier Fourier Theory
2004/11 EMBO 2004 Helical Processing Ed Egelman Image Analysis and 3D Reconstruction of Helical Polymers CapeTown3.7z (19.2 MB)
2004/11 EMBO 2004 Image Analysis, Noise and Alignment Ed Egelman NASAL: Noise Amplification by Simulated Alignment of Lousy images CapeTown2.7z (1.66 MB)
2004/11 EMBO 2004 Subject-based Lectures Ed Egelman DNA Structure – Structure, Forces and Topology DNA_structure.7z (0.2 MB)
2004/11 EMBO 2004 Symmetry Ed Egelman Symmetry and Complexity CapeTown1.7z (20.7 MB)
2004/11 EMBO 2004 3D Reconstruction Elena Orlova Methods of 3D reconstruction
2004/11 EMBO 2004 Angular Reconstruction and Conical Tilt Elena Orlova Angular reconstruction
2004/11 EMBO 2004 Contrast Transfer Function (CTF) Correction, Convolution Elena Orlova CTF correction embolec4_2004.7z (6.16 MB)
2004/11 EMBO 2004 Contrast Transfer Function (CTF) Correction, Convolution Elena Orlova Convolution and correlation
2004/11 EMBO 2004 Fourier Analysis Elena Orlova Introduction to Fourier Analysis
2004/11 EMBO 2004 Multivariate Statistical Analysis Elena Orlova Multivariate statistical analysis and classification
2004/11 EMBO 2004 TEM Image formation Elena Orlova Principles of TEM Image Formation embolec3-2004.pdf (6.58 MB)
2004/11 EMBO 2004 Image Analysis, Noise and Alignment Elena Orlova, Helen Saibil, V. Unger Image acquisition and noise reduction embolec5-2004.7z (26.7 MB)
2004/11 EMBO 2004 Symmetry Elena Orlova Symmetry and Alignment embolec6-and-7-2004.7z (3.28 MB)
2004/11 EMBO 2004 3D Reconstruction Eva Nogales Electron Microscopy and Image Reconstruction: a summary
2004/11 EMBO 2004 Subject-based Lectures Eva Nogales Photosynthesis embo2004_photosynthesis.7z (2.63 MB)
Other Cryo EM Ardan Patwardhan Electron cryo microscopy in structural biology cryoem-presentation.ppt
Other Fourier Analysis David de Rosier Fourier Transforms DeRosier-Fourier.7z (3.31 MB)
Other Helical Processing Ed Egelman Image Analysis and 3D Reconstruction of Helical Polymers Gordon_EM.ppt
2006 Other Single Particle Reconstruction Joachim Frank Single-Particle Reconstruction Struct_Biol_class_Frank_2006.ppt
Other 3D Reconstruction, Single Particle Reconstruction Marin van Heel Common Lines Theorem common_lines.ppt
2002 Other Single Particle Reconstruction Marin van Heel Electron/Light Microscopy microscopy_2002.ppt
Other Helical Processing Trevor Sewell Three Dimensional Reconstruction of Helical Objects
2001 Other Marin van Heel Principles of Phase Contrast (Electron) Microscopy Phase_Contrast_Principles.doc Phase_Contrast_MvH_2.ppt
2001 Other Cryo EM Marin van Heel Single particle cryo-EM Electron_Microscopy_2002.ppt
2005/09/05 EMBO 2005 Fourier Analysis Helen Saibil Basic Concepts of Fourier Analysis embolec1-2005.7z (2.34 MB)
embolec1-2005-with-sound.7z (11.7 MB)
2005/09/05 EMBO 2005 Contrast Transfer Function (CTF) Correction, Convolution Tony Crowther Concepts of convolution, CCF, CTF embolec2-2005.7z (6.86 MB)
embolec2-2005-with-sound.7z (17.2 MB)
2005/09/06 EMBO 2005 TEM Image formation Elena Orlova Principles of TEM image formation embolec3-2005.7z
2005/09/06 EMBO 2005 Image Analysis, Noise and Alignment Helen Saibil Image acquisition, noise and alignment embolec4-2005.7z (3.85 MB)
embolec4_2005-with-sound.7z (17.5 MB)
2005/09/07 EMBO 2005 Cryo EM Felix de Haas Microscopes for cryo-structural analysis embolec5-2005.7z
2005/09/07 EMBO 2005 Contrast Transfer Function (CTF) Correction, Convolution Helen Saibil Contrast transfer & CTF correction embolec6-2005.7z (7.48 MB)
embolec6_2005-with-sound.7z (17.7 MB)
2005/09/08 EMBO 2005 Symmetry Elena Orlova Point group symmetry: 3D ➝ 2D ➝ FT (2D) embolec7_2005.7z (17.6 MB)
embolec7_2005-with-sound.7z (26.6 MB)
2005/09/08 EMBO 2005 Angular Reconstruction and Conical Tilt Nicolas Boisset Conical tilt, projection matching embolec08-2005.7z (10.1 MB)
2005/09/09 EMBO 2005 2D Crystallisation Richard Henderson Electron Crystallography embolec9-2005.7z
2005/09/09 EMBO 2005 Multivariate Statistical Analysis Elena Orlova MSA & classification of single particles embolec10_2005.7z (27.2 MB)
embolec10_2005-with-sound.7z (35.8 MB)
2005/09/07 EMBO 2005 3D Reconstruction / Tomography Stephen Fuller Icosahedral and tomographic reconstruction of viruses embolec11-2005.7z (48.6 MB)
2005/09/12 EMBO 2005 Helical Processing Bridget Carragher Helical Processing embolec14_2005-with-sound.7z (27.2 MB)
2005/09/13 EMBO 2005 Map Representation and Analysis Helen Saibil Map representation and analysis embolec15-2005.7z (17.7 MB)
2005/09/06 EMBO 2005 Tomography Bram Koster Electron tomography: a 3D imaging technique with TEM
2005/09/11 EMBO 2005 Automation Bridget Carragher Automated EM
2005/09/09 EMBO 2005 2D Crystallisation Dave Stuart Crystallography
2005/09/12 EMBO 2005 3D Reconstruction Elena Orlova Methods of 3D reconstruction, resolution, FSC
2005/09/11 EMBO 2005 Fourier Analysis Marin van Heel Single-particle electron microscopy: a (Fourier) space odyssey
2005/09/13 EMBO 2005 Combining EM and Atomic Models Niels Volkman Combining electron microscopy with atomic models
2005 EMBO 2005 PYMOL Fitting atomic structures into EM maps embo2005_prac8.pdf (5.28 MB)

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